regex-dna benchmark ≈50MB N=5,000,000

Each chart bar shows how many times more Memory, one ↓ regex-dna program used, compared to the program that used least Memory.

These are not the only programs that could be written. These are not the only compilers and interpreters. These are not the only programming languages.

Column × shows how many times more each program used compared to the benchmark program that used least.

    sortsort sort
  ×   Program Source Code CPU secs Elapsed secs Memory KB Code B ≈ CPU Load
1.0C gcc #4 23.2223.2387,9321525  0% 1% 1% 100%
1.1C++ g++ #4 12.6212.6397,0601759  0% 1% 1% 100%
1.3Ada 2005 GNAT #6 23.3523.38112,8043740  1% 0% 0% 100%
1.3Ruby #8 28.6428.66117,880529  1% 0% 1% 100%
1.4Ada 2005 GNAT #5 17.7417.76123,8643492  0% 1% 1% 100%
1.4C gcc #2 30.0430.06126,7641099  1% 1% 1% 100%
1.6Perl #2 30.6930.72139,344527  0% 0% 0% 100%
1.7Hack #4 27.8027.81150,484832  1% 1% 0% 100%
1.7PHP #4 26.4426.47151,124832  0% 0% 0% 100%
1.8Ruby #5 29.2429.25154,888343  1% 1% 0% 100%
1.9Ruby #6 25.2025.21164,804442  1% 1% 0% 100%
2.0C++ g++ #3 26.0326.05177,352844  0% 1% 1% 100%
2.1Perl #4 60.2860.31188,604440  0% 0% 0% 100%
2.3C++ g++ 5.225.23197,900648  1% 1% 1% 100%
2.3PHP 12.0626.53200,280788  0% 0% 0% 100%
2.3C++ g++ #2 5.225.22202,556695  1% 1% 0% 100%
2.4PHP #2 34.1734.19207,884449  0% 0% 0% 100%
2.4Erlang HiPE #6 98.3798.41210,9201058  0% 0% 0% 100%
2.5Ruby #7 29.5929.60217,900507  0% 1% 0% 100%
2.5PHP #3 26.3426.35219,356459  0% 1% 0% 100%
2.6Rust 42.0942.11232,492878  1% 0% 0% 100%
2.9Python 3 23.0823.19257,976478  0% 1% 1% 100%
3.0OCaml #4 1.4423.16264,7441050  0% 0% 0% 100%
3.1C# Mono #6 65.8065.84271,844638  0% 1% 1% 100%
3.1C# Mono #2 66.5066.53275,404594  0% 0% 1% 100%
3.2Hack 13.0627.77281,000787  0% 0% 1% 100%
3.2Hack #3 27.4427.47282,272456  0% 0% 0% 100%
3.2Hack #2 27.4827.51283,148446  1% 0% 0% 100%
3.4Ruby #3 34.2934.31299,328501  0% 1% 0% 100%
3.7C gcc 5.225.23321,9082579  1% 0% 1% 100%
3.7Python 3 #5 23.5823.61326,820424  0% 0% 1% 100%
3.8Haskell GHC #2 26.5326.54335,6441518  0% 1% 1% 100%
3.8Ruby 48.4848.50335,824308  0% 1% 0% 100%
3.9Lua #3 19.2619.27346,052669  0% 0% 0% 100%
4.0Lua #2 30.9931.01349,596596  0% 0% 0% 100%
4.1Smalltalk VisualWorks 5 min5 min356,756584  0% 0% 0% 100%
4.4Ruby #2 33.7733.79389,416417  1% 1% 0% 100%
4.8Scala #5 26.8626.88420,4361704  1% 0% 0% 100%
5.3Lua 44.3444.38467,336437  0% 0% 0% 100%
5.8Go #8 86.1386.17508,876785  0% 1% 0% 100%
5.8OCaml #2 19.0319.06511,660615  0% 0% 0% 100%
5.8OCaml #3 19.2219.26511,7121014  0% 0% 0% 100%
5.8OCaml 19.2219.25511,7241502  0% 0% 0% 100%
5.9Java  #6 22.1822.19518,0681410  0% 1% 1% 100%
6.0Go #2 47.3447.37523,244789  1% 1% 0% 100%
6.2Go 120.81120.87548,932733  1% 0% 1% 100%
6.3Go #7 86.3886.42554,256652  1% 1% 0% 100%
6.4Java  #7 21.4021.42563,6361284  0% 1% 1% 100%
6.4Java  #8 22.9122.92566,7841377  0% 1% 1% 100%
6.6Java  #2 40.8441.44576,0721534  0% 1% 1% 100%
6.8JavaScript V8 #2 3.423.43599,980373  0% 1% 1% 100%
7.0C# Mono 67.0567.09611,776624  0% 1% 0% 100%
7.0Clojure #4 26.4026.44617,324707  0% 0% 1% 100%
7.1Clojure #3 44.2044.25623,768710  0% 0% 1% 100%
8.1Java  #5 23.5523.57707,988929  0% 1% 1% 100%
8.1Java  #4 23.8023.82709,576921  0% 0% 1% 100%
8.1Racket 40.1040.13713,892527  0% 0% 1% 100%
8.4Scala 38.5338.59739,360611  1% 1% 1% 100%
8.8Scala #2 32.9232.95770,908668  0% 1% 1% 100%
8.9Ruby JRuby #7 44.3444.37779,408507  0% 0% 1% 100%
9.5F# Mono #2 67.4767.50834,448413  0% 1% 0% 100%
10Lisp SBCL #3 41.7341.76880,1921948  0% 1% 0% 100%
11Ruby JRuby #5 41.5441.56981,124343  0% 1% 0% 100%
11Ruby JRuby #6 42.5242.55982,060442  0% 1% 0% 100%
11F# Mono 62.5062.53996,140639  0% 1% 1% 100%
24Ruby JRuby #2 52.9352.972,096,420417  1% 1% 1% 100%
24Ruby JRuby #3 53.3253.352,148,788501  0% 1% 0% 100%
25Ruby JRuby 82.2782.322,174,332308  1% 0% 0% 100%
27F# Mono #3 63.2763.302,387,044870  0% 1% 0% 100%
Dart #2 Timed Out10 min648
Erlang HiPE Timed Out10 min622
JavaScript V8 Bad Output365
Lisp SBCL Timed Out10 min591
Racket #2 Bad Output536
Ruby JRuby #8 Failed529
Scala #4 Failed723
Scala #3 Failed633
"wrong" (different) algorithm / less comparable programs
1.3Pascal Free Pascal 21.0421.05111,8161199
1.6Perl #7 4.244.26139,600567
2.2Perl #6 4.424.43190,588477
2.7Erlang HiPE #7 6.997.00237,6321198
2.8Java  #3 7.767.77245,6842084
missing benchmark programs
Fortran Intel No program
Pascal Free Pascal No program

 regex-dna benchmark : Match DNA 8-mers and substitute nucleotides for IUB codes

You can write your own program for this task and contribute to the benchmarks game by following these general instructions.

More specifically:

diff program output for this 100KB input file (generated with the fasta program N = 10000) with this output file to check your program is correct before contributing.

We are trying to show the performance of various programming language implementations - so we ask that contributed programs not only give the correct result, but also use the same algorithm to calculate that result.

We use FASTA files generated by the fasta benchmark as input for this benchmark. Note: the file may include both lowercase and uppercase codes.

Each program should

Revised BSD license

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